Review on Correlation Between Long Non-coding RNAs and Cell Differentiation

doi:10.13701/j.cnki.kqyxyj.2017.10.027

Abstract

Abstract: With the rapid development of genetics and bioinformatics technology, the long non-coding RNA (LncRNA) which once was considered as the transcription "noise", is now attracted more and more attention. It has been confirmed that LncRNA plays an important regulation role in almost all kinds of life activities, especially in the process of regulating gene expression by signaling molecules, decoy molecules, lead molecules, and scaffold molecular, etc, which has been one of the most hottest issues in life science. It is also known that LncRNAs performs their biological functions at different levels, including cell differentiation. This paper is to discuss the correlation between LncRNAs and cell differentiation, which includes LncRNAs with pluripotent stem cells who maintain their pluripotency and differentiation, LncRNAs with nerve cell differentiation, LncRNAs with muscles differentiation, and LncRNAs with osteoblast differentiation.

Key words: LncRNAs , Cell differentiation, Mechanism

CLC Number:

R780.1

WU Wen-zhen, WANG Kai-juan, WANG Jia-wei. Review on Correlation Between Long Non-coding RNAs and Cell Differentiation[J]. Journal of Oral Science Research, 2017, 33(10): 1127-1130.

References

[1] Hacisuleyman E, Shukla CJ, Weiner CL, et al. Function and evolution of local repeats in the Firre locus [J]. Nat Commun, 2016,7∶11021
[2] Fatica A, Bozzoni I. Long non-coding RNAs: new players in cell differentiation and development [J]. Nat Rev Genet, 2014, 15(1)∶7-21
[3] Morlando M, Ballarino M, Fatica A, et al. The role of long noncoding RNAs in the epigenetic control of gene expression [J]. ChemMedChem, 2014, 9(3)∶505-510
[4] Postepska-Igielska A1, Giwojna A1, Gasri-Plotnitsky L, et al. LncRNA Khps1 Regulates Expression of the Proto-oncogene SPHK1 via Triplex-Mediated Changes in Chromatin Structure [J]. Mol Cell, 2015, 60(4)∶626-636
[5] Kotake Y, Naemura M, Murasaki C. Regulation of cell proliferation and apoptosis by long noncoding RNA, ANRIL and PANDA [J]. Seikagaku, 2015, 87(2)∶230-233
[6] Yoon JH, Kim J, Gorospe M. Long noncoding RNA turnover [J]. Biochimie, 2015, 117∶15-21
[7] Lai F, Orom UA, Cesaroni M, et al. Activating RNAs associate with Mediator to enhance chromatin architecture and transcription [J]. Nature, 2013, 494(7438)∶497-501
[8] Chen L, Wang W, Cao L, et al. Long Non-Coding RNA CCAT1 Acts as a Competing Endogenous RNA to Regulate Cell Growth and Differentiation in Acute Myeloid Leukemia [J]. Mol Cells, 2016
[9] Sugimoto C, Fujita H, Wakao H. Mucosal-associated invariant T cells from induced pluripotent stem cells: A novel approach for modeling human diseases [J]. World J Stem Cells, 8(4)∶158-169
[10] Nishino K, Umezawa A. DNA methylation dynamics in human induced pluripotent stem cells [J]. Hum Cell. 2016
[11] Rosa A, Ballarino M. Long Noncoding RNA Regulation of Pluripotency [J]. Stem Cells Int, 2016, 2016∶1797692
[12] Fatica A, Bozzoni I. Long non-coding RNAs: new players in cell differentiation and development [J]. Nat Rev Genet, 2014, 15(1)∶7-21
[13] Morlando M, Ballarino M, Fatica A, et al. The role of long noncoding RNAs in the epigenetic control of gene expression [J]. ChemMedChem, 2014, 9(3)∶505-510
[14] Khalil AM, Guttman M, Huarte M, et al. Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression [J]. Proc Natl Acad Sci USA, 2009, 106(28)∶11667-11672
[15] Guttman M, Donaghey J, Carey BW, et al. lincRNAs act in the circuitry controlling pluripotency and differentiation [J]. Nature, 2011, 477(7364)∶295-300
[16] Ji P, Manupipatpong S, Xie N, et al. Induced Pluripotent Stem Cells: Generation Strategy and Epigenetic Mystery behind Reprogramming [J]. Stem Cells Int, 2016, 2016∶8415010
[17] Xu L, Tan YY, Ding JQ, et al. The iPS technique provides hope for Parkinson's disease treatment [J]. Stem Cell Rev, 2010, 6(3)∶398-404
[18] Kim JB, Sebastiano V, Wu G, et al. Oct4-Induced Pluripotency in Adult Neural Stem Cells [J]. Cell, 2009, 136(3)∶411-419
[19] Francescatto M, Vitezic M, Heutink P, et al. Brain-specific noncoding RNAs are likely to originate in repeats and may play a role in up-regulating genes in cis [J]. Int J Biochem Cell Biol, 2014, 54∶331-337
[20] Lv J, Liu H, Huang Z, et al. Long non-coding RNA identification over mouse brain development by integrative modeling of chromatin and genomic features [J]. Nucleic Acids Res, 2013, 41(22)∶10044-10061
[21] Aprea J, Prenninger S, Dori M, et al. Transcriptome sequencing during mouse brain development identifies long non-coding RNAs functionally involved in neurogenic commitment [J]. EMBO J, 2013, 32(24)∶3145-3160
[22] Saghaeian Jazi M, Samaei NM, Ghanei M, et al. Identification of new SOX2OT transcript variants highly expressed in human cancer cell lines and down regulated in stem cell differentiation [J]. Mol Biol Rep, 2016, 43(2)∶65-72
[23] Ng SY, Bogu GK, Soh BS, et al. The long noncoding RNA RMST interacts with SOX2 to regulate neurogenesis [J]. Molecular Cell, 2013, 51(3)∶349-359
[24] Shang YC, Wang SH, Xiong F, et al.Activation of Wnt3a signaling promotes myogenic differentiation of mesenchymal stem cells in mdx mice [J]. Acta Pharmacol Sin, 2016
[25] Gong C, Li Z, Ramanujan K, et al. A long non-coding RNA, LncMyoD, regulates skeletal muscle differentiation by blocking IMP2-mediated mRNA translation [J]. Dev Cell, 2015, 34(2)∶181-191
[26] Guo-qiang Wang, Yu Wang, Yan Xiong, et al. Sirt1 AS lncRNA interacts with its mRNA to inhibit muscle formation by attenuating function of miR-34a [J]. Sci Rep, 2016, 6∶21865
[27] Cesana M, Cacchiarelli D, Legnini I, et al. A Long Noncoding RNA Controls Muscle Differentiation by Functioning as a Competing Endogenous RNA [J]. Cell, 2011, 147(2)∶358-369
[28] Kallen AN, Zhou XB, Xu J, et al. The imprinted H19 LncRNA antagonizes let-7 microRNAs [J]. Molecular Cell, 2013,52(1)∶101-112
[29] Song WQ, Gu WQ, Qian YB, et al.Identification of long non-coding RNA involved in osteogenic differentiation from mesenchymal stem cells using RNA-Seq data [J]. Genet Mol Res, 2015, 14(4)∶18268-18279
[30] Jia Q, Jiang W, Ni L. Down-regulated non-coding RNA (LncRNA-ANCR) promotes osteogenic differentiation of periodontal ligament stem cells [J]. Archives of Oral Biology, 2015, 60(2)∶234-241
[31] Sannigrahi MK, Sharma R, Panda NK, et al. Role of Non-coding RNAs in Head and Neck Squamous Cell Carcinoma: a narrative review [J]. Oral Dis, 2017 Sep 21. doi: 10.1111/odi.12782. [Epub ahead of print]
[32] Gibb EA, Enfield KS, Stewart GL, et al. Long non-coding RNAs are expressed in oral mucosa and altered in oral premalignant lesions [J]. Oral Oncol, 2011, 47(11)∶1055-1061
[33] Chang SM, Hu WW. Long non-coding RNA MALAT1 promotes oral squamous cell carcinoma development via microRNA-125b/STAT3 axis [J]. J Cell Physiol, 2017 Sep 19. doi: 10.1002/jcp.26185. [Epub ahead of print]
[34] Shih JW, Chiang WF, Wu ATH, et al. Long noncoding RNA LncHIFCAR/MIR31HG is a HIF-1α co-activator driving oral cancer progression [J]. Nat Commun, 2017, 8∶15874
[35] Wu Y, Zhang L, Zhang L, et al. Long non-coding RNA HOTAIR promotes tumor cell invasion and metastasis by recruiting EZH2 and repressing E-cadherin in oral squamous cell carcinoma [J]. Int J Oncol, 2015, 46(6)∶2586-2594